Skip to content
Snippets Groups Projects
Select Git revision
  • 1-version-release-workflow protected
  • accept_alignment
  • add_ci_pipeline
  • deep-dive-data
  • deep_dive_exp
  • develop protected
  • master default protected
  • multiple_kmer_matches
  • native-type-hints
  • 2.0.3
  • 2.0.1
  • 1.2.2
  • 1.2.1
  • 1.2.1rc1
  • 1.0.0rc2
  • 1.2.0rc1
  • 1.0.0rc1
  • 1.1.0rc1
  • 1.0.0b3
  • 1.0.0b2
  • 1.0.0b1
21 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.017Apr1619Mar1413126428Feb22211228Jan272523222127Nov1413121130Oct241817152Sep27Aug2623141214May29Apr262319181716151110925Mar232226Feb201418Jan15Dec715Nov2Aug20Jul30Jun261287653fix testsdeep-dive-datadeep-dive-dataMaster => Developdevelopdevelopfixed test casesfixed test casesDeep-Dive iteration data used in predictionChanged type-hints Mapping to DictmastermasterUsed native type-hints whereever possiblenative-type-hintsnative-type-hintsbugfix: use updated in-house NGD for notebookaccept_alignmentaccept_alignmentRebased masterdeep_dive_expdeep_dive_expFix to jupyter notebook to use inverted vector from prediction module instead of inverting it ourselvesaccept gap characters so that alignments can be used as input. Purely for ease of useUpdated usage for Deep-Dive k=1 score in Predictionchanged unit testschanged google function nameremove alf_scoring filescorrect avg functionModified avg funcNormalise sumUse SeqPairSimilarity to count AASpecial k1 score for next rounds of deep diveUndo * score changeremove requirement for alfpy packageAdded docstrings for Normalised Google Distance functionsVersion bumpreplace google score with own function in notebookreplace google score with own functionappended option to run Google Scoreimplement NGD ourselvesModified kmer match score to consider mask characterdocs,fix: Replaced real path with template.2.0.32.0.3chore: Bump version from 2.0.2 to 2.0.3.tests: Implemented e2e tests for the capture tool.docs,fix: Rolled back to bio_shark module instead of src.SHARK-capture extension protocol can now be run from command lineREADME update to show how to use shark-capture extension protocol on resultsenforce partial files to be read in orderApplied final fixes to the finalize_sharkcapture script.feat: Made chunk_size configurable.READme change to clarifying strict folder namingadded minor comment for clarification