cosmetics

misc/new_project_template.sh

@@ -15,14 +15,17 @@ cd /Volumes/${PROJECT_DIR}
 ## setup data (unison target)
 mkdir data
 
-## setup scripts
+## setup scripts origin git
 git init --bare .scripts_git_origin
-git clone ssh://fileserver/projects/${PROJECT_DIR}/.scripts_git_origin scripts
-
 
 ## check out the working copy
 git clone ssh://fileserver/projects/${PROJECT_DIR}/.scripts_git_origin scripts
 
+## check out used workfing copy for rnaseq
+git --git-dir /Volumes/projects/bioinfo/scripts/ngs_tools/dev/.git archive --format zip --output ngs_tools.zip master
+git clone git-srv1:/local/git/bioinformatics .temp_ngs_tools
+cd .temp_ngs_tools
+git archive --format zip --output /full/path/to/ngs_tools.zip master
 
 #############################################
 ## setup project on cluster
@@ -47,6 +50,7 @@ ln -s /projects/bioinfo/scripts/ngs_tools/dev ngs_tools
 
 ## prepare gitignore to avoid that we commit it again
 echo ngs_tools > .gitignore
+echo ngs_tools.zip > .gitignore
 git add .gitignore
 git commit -m "started project"
 git push origin master