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Commit 66bbe73a authored by Naharajan's avatar Naharajan
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adding sessionInfo()

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common/cp_enrichment.R
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...@@ -127,7 +127,7 @@ annoDb <- guess_anno_db(geneLists$ensembl_gene_id) # e.g. "org.Hs.eg.db" ...@@ -127,7 +127,7 @@ annoDb <- guess_anno_db(geneLists$ensembl_gene_id) # e.g. "org.Hs.eg.db"
#idType("org.Hs.eg.db") #idType("org.Hs.eg.db")
## convert to entrez gene ids ## convert to entrez gene ids
sessionInfo()
glMappedRaw <- clusterProfiler::bitr(geneLists$ensembl_gene_id, fromType="ENSEMBL", toType="ENTREZID", annoDb=annoDb) %>% glMappedRaw <- clusterProfiler::bitr(geneLists$ensembl_gene_id, fromType="ENSEMBL", toType="ENTREZID", annoDb=annoDb) %>%
set_names("ensembl_gene_id", "entrez_gene_id") %>% right_join(geneLists) set_names("ensembl_gene_id", "entrez_gene_id") %>% right_join(geneLists)
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