added backward compatibility wrappers for old shell cluster utils

dge_workflow/dge_utils.sh

@@ -27,9 +27,20 @@ export PATH=/home/brandl/bin/subread-1.4.6-p3-Linux-x86_64/bin:$PATH
 #export PATH=/home/brandl/bin/STAR/STAR-STAR_2.4.1d/source:$PATH
 export PATH=/home/brandl/bin/STAR-2.5.0b/source:$PATH
 
-export PATH=$PATH:/projects/bioinfo/scripts/joblist_v0.5-SNAPSHOT
-#export PATH=/projects/bioinfo/scripts/joblist_v0.5-SNAPSHOT:$PATH
-#eval "$(jl shortcuts)"
+
+## add cluster job manager
+export PATH=/projects/bioinfo/scripts/joblist_v0.5:$PATH
+
+## backward compatibility wrappers for old shell cluster utils
+joblist(){
+  jl add $*
+}
+export -f joblist
+
+wait4jobs(){
+  jl wait $*
+}
+export -f wait4jobs
 
 ## also add spinr
 export PATH=$PATH:/projects/bioinfo/scripts/spinr

[brandl]

@lakshman this should hopefully fix the problem of missing joblist executable. Simple source dge_utils.sh again.

[lakshman]

@brandl Couldn't locate the mysub command bash: mysub: command not found

[brandl]

Indeed and fixed with ae3d1340