continued STAR evaluation

dge_workflow/dge_utils.sh

@@ -231,7 +231,7 @@ fi
 for bamFile in $bamFiles; do
     sample=$(basename $bamFile .bam)
     echo "converting $bamFile to bigwig format"
-    mysub "${project}__bw__${sample}" "genomeCoverageBed -bg -ibam $bamFile  -g ${genomeFai} |  wigToBigWig -clip stdin ${genomeFai} ${sample}.bw" -q short | joblist .bigwig
+    mysub "${project}__bw__${sample}" "genomeCoverageBed -split -bg -ibam $bamFile  -g ${genomeFai} |  wigToBigWig -clip stdin ${genomeFai} ${sample}.bw" -q short | joblist .bigwig
 done
 
 wait4jobs .bigwig