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Commit d883b42a authored by Holger Brandl's avatar Holger Brandl
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continued STAR evaluation

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dge_workflow/dge_utils.sh
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...@@ -231,7 +231,7 @@ fi ...@@ -231,7 +231,7 @@ fi
for bamFile in $bamFiles; do for bamFile in $bamFiles; do
sample=$(basename $bamFile .bam) sample=$(basename $bamFile .bam)
echo "converting $bamFile to bigwig format" echo "converting $bamFile to bigwig format"
mysub "${project}__bw__${sample}" "genomeCoverageBed -bg -ibam $bamFile -g ${genomeFai} | wigToBigWig -clip stdin ${genomeFai} ${sample}.bw" -q short | joblist .bigwig mysub "${project}__bw__${sample}" "genomeCoverageBed -split -bg -ibam $bamFile -g ${genomeFai} | wigToBigWig -clip stdin ${genomeFai} ${sample}.bw" -q short | joblist .bigwig
done done
wait4jobs .bigwig wait4jobs .bigwig
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