Commits · c183f739b93dab0204cad4f88dbec26a68afa42c · bioinfo / ngs_tools

Mar 09, 2015
- cont. chipseq qc · c183f739
  Holger Brandl authored 10 years ago
  
  c183f739
- added more qc tools · 55df576d
  Holger Brandl authored 10 years ago
  
  55df576d
- cont khan pipeline · 623c227a
  Holger Brandl authored 10 years ago
  
  623c227a
- cont chipseq workflow · 8e6e0e04
  Holger Brandl authored 10 years ago
  
  8e6e0e04
- started chipseq workflow · 37bf0348
  Holger Brandl authored 10 years ago
  
  37bf0348
Mar 04, 2015
- migrated to core_commons v1.4 · d6cd88e6
  Holger Brandl authored 10 years ago
  
  d6cd88e6
Feb 13, 2015
- added deprecation note for spinr · d94ceeff
  Holger Brandl authored 10 years ago
  
  d94ceeff
Feb 12, 2015
- cosmetics · b4083c74
  Holger Brandl authored 10 years ago
  
  b4083c74
Feb 03, 2015
- added expression filter clustering · 3c07f87a
  Holger Brandl authored 10 years ago
  
  3c07f87a
Feb 02, 2015
- new adapater set for trimming · bf215324
  Holger Brandl authored 10 years ago
  
  bf215324
- removed db creation from template · 70f09c08
  Holger Brandl authored 10 years ago
  
  70f09c08
- simplified report generation · 4da6d8d1
  Holger Brandl authored 10 years ago
  
  4da6d8d1
- fixed args parsing · 0f027c52
  Holger Brandl authored 10 years ago
  
  0f027c52
Jan 28, 2015
- integrated cutadapt summary report · 3b6bc737
  Holger Brandl authored 10 years ago
  
  3b6bc737
Jan 27, 2015
- integrated cutadapt log parser into workflow · 9dac4f98
  Holger Brandl authored 10 years ago
  
  9dac4f98
- Merge branch 'master' of git-srv1:/local/git/bioinformatics · f5a99481
  Holger Brandl authored 10 years ago
  
  f5a99481
- impl replicate merging · 23d87cef
  Holger Brandl authored 10 years ago
  
  23d87cef
Jan 21, 2015
- new names · 9ce66a37
  Melanie Schneider authored 10 years ago
  
  9ce66a37
- new variable names · 2b5d595c
  Melanie Schneider authored 10 years ago
  
  2b5d595c
- added usage example for snippet spinning · 8d217177
  Holger Brandl authored 10 years ago
  
  8d217177
Jan 14, 2015
- adjusted knitr parameters · 103c432c
  Holger Brandl authored 10 years ago
  
  103c432c
- continued cutadapt report · f7605dc7
  Melanie Schneider authored 10 years ago
  
  f7605dc7
- Merge branch 'master' of ssh://git-srv1/local/git/bioinformatics · 2ebf7a24
  Melanie Schneider authored 10 years ago
  
  2ebf7a24
- two tables · 08a3bee1
  Melanie Schneider authored 10 years ago
  
  08a3bee1
Jan 06, 2015
- cont. helin dge analysis · 9b972130
  Holger Brandl authored 10 years ago
  
  9b972130
Dec 19, 2014
- added utilities for snippet spinning · 79a1b571
  Holger Brandl authored 10 years ago
  
  79a1b571
Dec 18, 2014
- continued dge analysis · e582bd2d
  Holger Brandl authored 10 years ago
  
  e582bd2d
- disabled bootstrap support · 3e1ed020
  Holger Brandl authored 10 years ago
  
  3e1ed020
- added jquery-dependencies to knit header. · 9adb3a1e
  Holger Brandl authored 10 years ago
  
  9adb3a1e
Dec 17, 2014
- merged with origin · 522d5257
  Holger Brandl authored 10 years ago
  
  522d5257
- initial version of ca report · 982e3d20
  Melanie Schneider authored 10 years ago
  
  982e3d20
Dec 12, 2014
- cont mouse dge analysis · 61f942d4
  Holger Brandl authored 10 years ago
  
  61f942d4
Dec 11, 2014
- gene heatmap cards · f9820a8c
  Holger Brandl authored 10 years ago
  
  f9820a8c
- added technical replicate merging to dge_utils · 2bd01e0a
  Holger Brandl authored 10 years ago
  
  2bd01e0a
Dec 08, 2014
- cont. dge analysis · e4d97c24
  Holger Brandl authored 10 years ago
  
  e4d97c24
Dec 05, 2014
- cont cross-species analysis · a496a7db
  Holger Brandl authored 10 years ago
  
  a496a7db
Nov 28, 2014
- added actin binding analysis · 392ebd3d
  Holger Brandl authored 10 years ago
  
  392ebd3d
- better table export · 80e7bca7
  Holger Brandl authored 10 years ago
  
  80e7bca7
- added contrasta for mouse · 31b38a2d
  Holger Brandl authored 10 years ago
  
  31b38a2d
- workflow refinements · 2c2c4606
  Holger Brandl authored 10 years ago
  
  2c2c4606