Explore projects

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

useful functionality for image-, data-analysis and classification of stembryos

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

R utilities for data analysis and bioinformatics

This repository contains source codes and notebook demos for trainin STENCIL-NET.

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"

MATLAB implementation of image naturalization

This is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.

PPM client for diffusion on curved surfaces

A MATLAB implementation of the split-Bregman algorithm for image segmentation