Explore projects

Region Competition algorithm implemented as an ITK filter (C++).

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

Plugin to fit and unwrap ellipsoid surfaces

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Segmentation of the basal cell-matrix contact sites on laminin structure

Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

R utilities for data analysis and bioinformatics

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

A test repository for teaching