Explore projects
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Scientific Computing / bioimage_team / CourseMaterialImageAnalysis
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
Backend APIs (Flask) exposing data from database in RESTful format
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Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"
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tothpetroczylab / Picnic
BSD 3-Clause "New" or "Revised" LicensePICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.
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Sbalzarini Lab / Software / Math / FaspHeuristic
MIT LicenseLibrary implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)
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bioinfo / ngs_tools
BSD 3-Clause "New" or "Revised" LicenseA collection of tools to process and manipulate high-throughput sequencing data
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dibrov / chromosome_size
MIT LicenseUpdated -
mirandaa / LipidXplorer2
BSD 3-Clause "New" or "Revised" LicenseCompletly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files
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walker / cellpose_explore
BSD 3-Clause "New" or "Revised" LicenseExploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation
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rhaase / clij_neubias_2020
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
Scientific Computing / bioimage_team / IACourse_2020-12
Creative Commons Attribution Non Commercial 4.0 International3day Image analysis course given externally in 2020-12.
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Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"
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rhaase / lecture_tracking_trackmate
BSD 3-Clause "New" or "Revised" LicenseUpdated -
rhaase / lecture_fiji_batch_processing_macro
BSD 3-Clause "New" or "Revised" LicenseUpdated -