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hyrdrodynamics methods for kirchhoff graphs

Sequencing analysis pipeline for our paper "Human assembloids recapitulate periportal liver tissue in vitro"

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

drop-in header-only C++ library to detect hardware capabilities at runtime and at compiletime

Image analysis course (4.5h): Concepts and hands-on with Fiji.

Napari-stress based image analysis pipeline for measuring physical stress in 68 microscopy recordings of oil droplets embedded in liver organoids.

This is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.

Generate MFQL files automagically

MATLAB Toolbox for cell-outline segmentation in phase-contrast images

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.