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Forthreads Library

scripts related to the publication

parallel parameter homotopy through bertini

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Generate MFQL files automagically

Scripts written for the paper: "Asymmetric neurogenic commitment of retinal progenitors involves Notch through the endocytic pathway"

Interaction Analysis Toolbox for MATLAB

Particle Tracking C/Java Source Code

Implementation of 2D unet. Use as base for user projects.