Explore projects

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

PPM_RC: Distributed-Memory Parallel Image Segmentation

Small scripts and bits for data processing interoperability with the cluster

Scenery - Virtual Reality and Augmented Reality framework

Jenkins pipelines

polishing pipelines

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

A collection of tools to process and manipulate high-throughput sequencing data

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.