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Similarity/Homology Assessment by Relating K-mers

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

private repo with testing jupyter notebooks

Supplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"

This is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Theory analysis and code for studying Drosophila wing disc eversion

Implementation of 2D unet. Use as base for user projects.

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Improving contrast in confocal data by degrading image with model of light scattering

This software package implements the identification of robust topological defects.