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Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

openfpm_pdata

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Data and code for "impossible ecologies" paper

Library for producing and processing on the Adaptive Particle Representation (APR)

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)