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class definitions and methods for kirchhoff graphs

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

PDE inference from limited spatio-temporal data

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

This repository contains source codes and notebook demos for trainin STENCIL-NET.

Library for producing and processing on the Adaptive Particle Representation (APR)

Small scripts and bits for data processing interoperability with the cluster

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Implementation of 2D unet. Use as base for user projects.

scripts related to the publication

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Scripts written for the paper: "Asymmetric neurogenic commitment of retinal progenitors involves Notch through the endocytic pathway"

Quantitative analysis of diacylglycerol signaling kinetics in single cells

Generate MFQL files automagically

Complementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".