Explore projects

Similarity/Homology Assessment by Relating K-mers

This repository contains the image analysis pipelines for bile canaliculi analysis and mesenchyme counting associated with the paper "Mouse liver assembloids model periportal architecture and biliary fibrosis"

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.

Python package of the deTEL translation error detection pipeline from mass-spectrometry data

Docker container for single-cell-RNAseq analysis

New analyses for the "Navigating Uncertainty in Encoded Decision-Space" project. Analysis for both "Fruit Task" and "Hexagons Task."

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Backend APIs (Flask) exposing data from database in RESTful format

useful functionality for image-, data-analysis and classification of stembryos

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

MotionTracking project to Analyze Hepatocyte Cages.

Theory analysis and code for studying Drosophila wing disc eversion