A collection of tools to process and manipulate high-throughput sequencing data

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

openfpm_pdata

An R package containing the SCF helper functions

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group. More information about it can be found on official webpage of MOSAIC group.

Slicing lc ms data into time ... slices, to run lipidxplorer on the slices

Generate MFQL files automagically

Complementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".