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Huch lab / Image Analysis Pipelines - Mouse liver assembloids model periportal architecture and biliary fibrosis
BSD 3-Clause "New" or "Revised" LicenseThis repository contains the image analysis pipelines for bile canaliculi analysis and mesenchyme counting associated with the paper "Mouse liver assembloids model periportal architecture and biliary fibrosis"
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Sbalzarini Lab / Software / Math / FaspHeuristic
MIT LicenseLibrary implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)
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infrastructure / grails-plugin-jmesa
BSD 3-Clause "New" or "Revised" LicenseUpdated -
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moneta / Wizards_of_O2
MIT LicenseUpdated -
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MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.
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Backend APIs (Flask) exposing data from database in RESTful format
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Sbalzarini Lab / Software / Math / minter
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bioinfo / ngs_tools
BSD 3-Clause "New" or "Revised" LicenseA collection of tools to process and manipulate high-throughput sequencing data
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Huch lab / prior_et_al_2019
MIT LicenseSupplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"
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Veenvliet Lab / Integrated_Molecular-Phenotypic_Profiling_of_Stembryos
BSD 3-Clause "New" or "Revised" LicenseThis is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.
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Veenvliet Lab / organoid_prediction_python
BSD 3-Clause "New" or "Revised" Licenseuseful functionality for image-, data-analysis and classification of stembryos
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