Explore projects
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Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.
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Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.
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Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)
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Region Competition algorithm implemented as an ITK filter (C++).
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Implementation of the fast curvature filters for images.
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MSS trajectory analysis
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Brownian dynamics simulation of cross-linked filament bundles
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Exact stochastic simulation of intracellular transport
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pSSAlib: Stochastic chemical network and reaction-diffusion simulation
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PPM client for diffusion on curved surfaces
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PPM_RC: Distributed-Memory Parallel Image Segmentation
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