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Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

openfpm_pdata

Library for producing and processing on the Adaptive Particle Representation (APR)

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

openfpm_pdata

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Region Competition algorithm implemented as an ITK filter (C++).