Commits · 2022d0cf0b077fb6fbd768ff58257f2a65b780ef · hubatsch / Frap Theory

Aug 24, 2020
- Revert "Changing plots order." · 2022d0cf
  Lars Hubatsch authored 4 years ago
  
  This reverts commit 9e00834c.
  2022d0cf
- Changing plots order. · 9e00834c
  Lars Hubatsch authored 4 years ago
  
  9e00834c
Aug 18, 2020
- Changed plotting. · ae58a15a
  Lars Hubatsch authored 4 years ago
  
  ae58a15a
Aug 12, 2020
- Plots for fig. 1 now in python. · 799c9803
  Lars Hubatsch authored 4 years ago
  
  799c9803
Aug 10, 2020
- Adjusting to new input parameters. · eb7b7e85
  Lars Hubatsch authored 4 years ago
  
  eb7b7e85
- Major update to figures Droplet_FRAP paper. · e0a470af
  Lars Hubatsch authored 4 years ago
  
  e0a470af
Aug 06, 2020
- Output Python -> Matlab. · 352121fc
  Lars Hubatsch authored 4 years ago
  
  352121fc
Aug 05, 2020
- Adding radial average for simulations. · 197127e8
  Lars Hubatsch authored 4 years ago
  
  197127e8
- Adding save and load functions for dolfin functions. · ea36c41a
  Lars Hubatsch authored 4 years ago
  
  ea36c41a
- Deleting old notebooks. · d2407b64
  Lars Hubatsch authored 4 years ago
  
  d2407b64
- Adding normalization factors. Cleaning up. · 04f59817
  Lars Hubatsch authored 4 years ago
  
  04f59817
Aug 04, 2020
- Correcting integral for total entropy production rate. · f88af207
  Lars Hubatsch authored 4 years ago
  
  f88af207
- Adding equilibrium initial condition, called phi_tot. · adb20417
  Lars Hubatsch authored 4 years ago
  
  adb20417
Jul 31, 2020
- Adding wetting and membrane binding · 87fe65cd
  Marc Karnat authored 4 years ago
  
  87fe65cd
- Adding entropy change for moving boundary. · 7a7c2b4a
  Lars Hubatsch authored 4 years ago
  
  7a7c2b4a
- Adding entropy change. · 2f38c793
  Lars Hubatsch authored 4 years ago
  
  2f38c793
Jul 30, 2020
- Changed sign of fluxes. Fluxes do not agree between Stefano/Lars. · 97eb2c59
  Lars Hubatsch authored 4 years ago
  
  97eb2c59
- Automatic distinction between client and constituent equations. · ad18b356
  Lars Hubatsch authored 4 years ago
  
  ad18b356
Jul 29, 2020
- Flux for FRAP seems to work. · 329c9e43
  Lars Hubatsch authored 4 years ago
  
  329c9e43
Jul 22, 2020
- FRAP plot works. · 87ac3b65
  Lars Hubatsch authored 4 years ago
  
  87ac3b65
- Moving boundary agrees in principle with Langevin. · eb8ab15b
  Lars Hubatsch authored 4 years ago
  
  eb8ab15b
- Merge branch 'master' of https://gitlab.pks.mpg.de/mesoscopic-physics-of-life/frap_theory · 60a71257
  Lars Hubatsch authored 4 years ago
  
  60a71257
- Uniform mesh, eq. temporarily changed to client. Uniform IC. · 96658c52
  Lars Hubatsch authored 4 years ago
  
  96658c52
Jul 21, 2020
- Major revamp. Reduce and unified fitting code. · 10aa9858
  Marc Karnat authored 4 years ago
  
  10aa9858
Jul 20, 2020
- Moving boundary works for v=10^-15. · 01ca53ec
  Lars Hubatsch authored 4 years ago
  
  01ca53ec
Jul 19, 2020
- Moving boundary closer to working, still oscillating around boundary. · 19eb2a66
  Lars Hubatsch authored 4 years ago
  
  19eb2a66
Jul 18, 2020
- WIP: continue work on moving boundary. Step function for mesh. · faa776dd
  Lars Hubatsch authored 4 years ago
  
  faa776dd
- WIP: introducing moving boundary. v=0 works as expected. · 5f1b99c3
  Lars Hubatsch authored 4 years ago
  
  5f1b99c3
Jul 17, 2020
- WIP on prob_laplace.m · c1e040c0
  Lars Hubatsch authored 4 years ago
  
  c1e040c0
- Meshing now symmetric around boundary. Gamma0=1 now implicit. · c986a170
  Lars Hubatsch authored 4 years ago
  
  c986a170
Jul 16, 2020
- Unifying sweep for distance from coverslip. New default for phi_tot_out. · c1ea8c32
  Lars Hubatsch authored 4 years ago
  
  c1ea8c32
- Finer for coverslip distance simus. · 166f23fc
  Lars Hubatsch authored 4 years ago
  
  166f23fc
- Parallel test on Ubuntu works with mshr, not with xml. · 8e168460
  hubatsch authored 4 years ago
  
  mpi_test.py doesn't run, fenics_mpi_example runs with mpirun -n 4 python3 fenics_mpi_example.py and scales well with number of cores. mpi_test.py gives error point outside domain when run in parallel, but works well single core.
  8e168460
Jul 14, 2020
- Deleting variable two time step function. · 98416a14
  Marc Karnat authored 4 years ago
  
  98416a14
- Adding FEM vs Matlab comparison full FRAP. Also adding half FRAP code. · ec20a3a3
  Marc Karnat authored 4 years ago
  
  ec20a3a3
- Layout changes. · f1d8e47a
  Marc Karnat authored 4 years ago
  
  f1d8e47a
- Adding Gamma_0 / mobility to FP equation. · 02a3d2fb
  Lars Hubatsch authored 4 years ago
  
  02a3d2fb
Jul 13, 2020
- Merge branch 'master' of https://gitlab.pks.mpg.de/mesoscopic-physics-of-life/frap_theory · 88afc875
  Lars Hubatsch authored 4 years ago
  
  88afc875
- Create a mesh from an image · 236db0e8
  Marc Karnat authored 4 years ago
  
  236db0e8
- Cosmetic changes. · 9c0f4b3a
  Lars Hubatsch authored 4 years ago
  
  9c0f4b3a