Version 1.0.20

doc/source/changelog.rst

@@ -2,6 +2,9 @@
 Changelog
 ================
 
+* 1.0.20
+    - ParticleTracker plugin now can use GPU acceleartion provided by CLIJ2
+
 * 1.0.19
     - Discrete region sampling (DRS) is finally available in official release
 

doc/source/conf.py

@@ -22,7 +22,7 @@ copyright = '2020, MOSAIC Group, Sbalzarini Lab, mosaic.mpi-cbg.de'
 author = 'MOSAIC Group, Sbalzarini Lab'
 
 # The full version, including alpha/beta/rc tags
-release = '1.0.19'
+release = '1.0.20'
 
 
 # -- General configuration ---------------------------------------------------

doc/source/particleTrackerTutorial.rst

@@ -48,6 +48,7 @@ The dialog showing now has 2 parts: Particle Detection and Particle Linking.
 The parameters relevant for detection are:
 
 * **Radius**: Approximate radius of the particles in the images in units of pixels. The value should be slightly larger than the visible particle radius, but smaller than the smallest inter-particle separation.
+* **Accelerate with CLIJ2 (experimental)**: Use CLIJ2 to utilize GPU for detection of particles. Especially good for large radius (>10) setting. IMPORTANT: This option is visible only when CLIJ2 is installed (enable 'clij' and 'clij2' in update sites of your Fiji to download and install it).
 * **Cutoff**: The score cut-off for the non-particle discrimination
 * **Per/Abs**: The percentile (r) (or absolute intensity value) that determines which bright pixels are accepted as Particles. All local maxima in the upper rth percentile of the image intensity distribution ( or absolute intensity value ) are considered candidate Particles. Unit: percent (%) (or absolute intensity value)
 * **Absolute**: when enable it read the Per/Abs parameter as absolute intensity value

pom.xml

@@ -7,7 +7,7 @@
     <groupId>mosaic</groupId>
     <artifactId>MosaicSuite</artifactId>
     <packaging>jar</packaging>
-    <version>1.0.19</version>
+    <version>1.0.20</version>
     <description>Package contains image processing algorithms developed in MOSAIC Group</description>
     <url>http://mosaic.mpi-cbg.de/?q=downloads/imageJ</url>
     <inceptionYear>2010</inceptionYear>