Commits · d0b89814920569f06763b2e25b4d3dc1c94336f0 · bioinfo / ngs_tools

Dec 02, 2015
- migrated bc wrapper to jl · d0b89814
  Holger Brandl authored 9 years ago
  
  d0b89814
- removed no longer needed rend.R args quoting · 749ddf64
  Holger Brandl authored 9 years ago
  
  749ddf64
Dec 01, 2015
- adjusted star to use jl · 0445369e
  Holger Brandl authored 9 years ago
  
  0445369e
- started new star analysis · 7965e302
  Holger Brandl authored 9 years ago
  
  7965e302
- diambiguated shortcuts from lsf_utils · 0edeacfc
  Holger Brandl authored 9 years ago
  
  0edeacfc
Nov 12, 2015
- inc coreutils version to v1.20 · 2c01d869
  Holger Brandl authored 9 years ago
  
  2c01d869
Nov 09, 2015
- inc lsf_utils version · 4b6ca748
  Holger Brandl authored 9 years ago
  
  4b6ca748
Nov 06, 2015
- implemented coverage analysis · 2552da1c
  Holger Brandl authored 9 years ago
  
  2552da1c
Nov 03, 2015
- datautils version inc · 9e8d1f22
  Holger Brandl authored 9 years ago
  
  9e8d1f22
- fixed version tag of datautils · 4b2d593a
  Holger Brandl authored 9 years ago
  
  4b2d593a
Nov 02, 2015
- improved genome guessing · 5a33481c
  Holger Brandl authored 9 years ago
  
  5a33481c
Oct 28, 2015
- added expression tracking to simone analysis · e17cdaf8
  Holger Brandl authored 9 years ago
  
  e17cdaf8
- fixed fastqc summary · 3f91930e
  Holger Brandl authored 9 years ago
  
  3f91930e
Sep 28, 2015
- cosmetics · 5ea043a1
  Melanie Schneider authored 9 years ago
  
  5ea043a1
- added extra outputs for gsea · 4b055937
  Holger Brandl authored 9 years ago
  
  4b055937
Sep 22, 2015
- continued new star workflow · cb717d26
  Holger Brandl authored 9 years ago
  
  cb717d26
- with more text · 7155f9eb
  Melanie Schneider authored 9 years ago
  
  7155f9eb
- refined star wrapper · 39bdbab8
  Holger Brandl authored 9 years ago
  
  39bdbab8
- moved up qc section · b5c62ff0
  Holger Brandl authored 9 years ago
  
  b5c62ff0
Sep 21, 2015
- configurable output prefix · 9cf14439
  Holger Brandl authored 9 years ago
  
  9cf14439
- imprved CLI · e4398a26
  Holger Brandl authored 9 years ago
  
  e4398a26
- tweaked names in star count matrix aggregation · 6c36180a
  Holger Brandl authored 9 years ago
  
  6c36180a
- update core dependencies · caeeea12
  Holger Brandl authored 9 years ago
  
  caeeea12
- polished version · d801a060
  Melanie Schneider authored 9 years ago
  
  d801a060
Sep 18, 2015
- fixed fc analysis for replicated scheme · 8f5633ac
  Holger Brandl authored 9 years ago
  
  8f5633ac
Sep 17, 2015
- more flexible bam correlation wrapper · 63b17d41
  Holger Brandl authored 9 years ago
  
  63b17d41
- upgraded core libs to v1.14 · 609235c3
  Holger Brandl authored 9 years ago
  
  609235c3
- increased bowtie versino to 2.2.5 · 2d1269ee
  Holger Brandl authored 9 years ago
  
  2d1269ee
Sep 16, 2015
- started 2nd krause batch processing · 70b801e5
  Holger Brandl authored 9 years ago
  
  70b801e5
Sep 15, 2015
- continued intersection analysis · cbf6758d
  Holger Brandl authored 9 years ago
  
  cbf6758d
- commented out enrichement section · 41344d37
  Holger Brandl authored 9 years ago
  
  41344d37
- smoothed deseq workflow · a7cb6336
  Holger Brandl authored 9 years ago
  
  a7cb6336
- changed to use DT · 9c606c16
  Holger Brandl authored 9 years ago
  
  9c606c16
Sep 11, 2015
- updated version · a7feaa6c
  Melanie Schneider authored 9 years ago
  
  a7feaa6c
- new featcounts_deseq · c8946c90
  Melanie Schneider authored 9 years ago
  
  c8946c90
Sep 08, 2015
- continued STAR evaluation · d883b42a
  Holger Brandl authored 9 years ago
  
  d883b42a
- added warning if index already existis · 63d9ea90
  Holger Brandl authored 9 years ago
  
  63d9ea90
Sep 07, 2015
- cont star integration · 0cebbcb3
  Holger Brandl authored 9 years ago
  
  0cebbcb3
- improved star integration · cebd3cb7
  Holger Brandl authored 9 years ago
  
  cebd3cb7
Sep 03, 2015
- updated star version · ae76b665
  Holger Brandl authored 9 years ago
  
  ae76b665