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Sbalzarini Lab / Software / Image Representation / LibAPR
Apache License 2.0Library for producing and processing on the Adaptive Particle Representation (APR)
Topics: APRUpdated -
Scientific Computing / bioimage_team / stardist_nnet_explore
BSD 3-Clause "New" or "Revised" LicenseUpdated -
Scientific Computing / DAG_signaling_kinetics
BSD 3-Clause "New" or "Revised" LicenseQuantitative analysis of diacylglycerol signaling kinetics in single cells
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this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells
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Scientific Computing / bioimage_team / unet2d_base
BSD 3-Clause "New" or "Revised" LicenseImplementation of 2D unet. Use as base for user projects.
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nerli / Nerli_et_al_2020
MIT LicenseScripts written for the paper: "Asymmetric neurogenic commitment of retinal progenitors involves Notch through the endocytic pathway"
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Scientific Computing / Belicova_et_al_BC_morphogenesis
BSD 3-Clause "New" or "Revised" Licensescripts related to the publication
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This repository contains source codes and notebook demos for trainin STENCIL-NET.
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Sbalzarini Lab / Software / Parallel Computing / PPM / ppm
GNU General Public License v3.0 onlyUpdated -
mirandaa / LipidXplorer
OtherUpdated -
PDE inference from limited spatio-temporal data
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kramer / cycle-coalescence-algorithm
MIT LicenseThis is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.
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Scientific Computing / Soans_et_al_opticalcup_surface
BSD 3-Clause "New" or "Revised" LicenseScript for publication - Matrix topology guides collective cell migration in vivo
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Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021
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krishna / Laminin_network
Creative Commons Zero v1.0 UniversalHexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.
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publications / nadler / 2022 Barahtjan and Iglesias Artola et al. Monosaccharide imaging
MIT LicenseBifunctional Monosaccharides Preferentially Localize to Nuclear Subcompartments
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A web service for calculating the Levenshtein distance between two sequences
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This repository is all about simulating flow driven pruning in biological flow networks.
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MotionTracking project to Analyze Hepatocyte Cages.
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