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Similarity/Homology Assessment by Relating K-mers

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Backend APIs (Flask) exposing data from database in RESTful format

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.

Library for producing and processing on the Adaptive Particle Representation (APR)

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

useful functionality for image-, data-analysis and classification of stembryos

Theory analysis and code for studying Drosophila wing disc eversion

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Implementation of 2D unet. Use as base for user projects.

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.