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Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Backend APIs (Flask) exposing data from database in RESTful format

Implementation of 2D unet. Use as base for user projects.

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

PDE inference from limited spatio-temporal data

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Complementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".

useful functionality for image-, data-analysis and classification of stembryos

This repository contains source codes and notebook demos for trainin STENCIL-NET.

A Python library for reducing differential equations and dynamical systems.

collections of hackyhour examples and documentation

Library for producing and processing on the Adaptive Particle Representation (APR)