Explore projects
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Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.
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assembly / asm_wPlaDum
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steinbac / ngs_tools
BSD 3-Clause "New" or "Revised" LicenseA collection of tools to process and manipulate high-throughput sequencing data
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Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells
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tothpetroczylab / deTELpy
BSD 3-Clause "New" or "Revised" LicensePython package of the deTEL translation error detection pipeline from mass-spectrometry data
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Scenery - Virtual Reality and Augmented Reality framework
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patches to vfb-run to allow multiple xvfb processes on one machine
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MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.
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Small scripts and bits for data processing interoperability with the cluster
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Complementary information concerning the article "Evolution and cell-type specificity of human-specific genes preferentially expressed in progenitors of fetal neocortex"
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Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"
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argupta / openfpm_data
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Sbalzarini Lab / Software / Parallel Computing / PPM-RC
GNU General Public License v3.0 onlyPPM_RC: Distributed-Memory Parallel Image Segmentation
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Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"
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