GitLab

Similarity/Homology Assessment by Relating K-mers

A collection of tools to process and manipulate high-throughput sequencing data

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Backend APIs (Flask) exposing data from database in RESTful format

Documentations for CD-CODE project

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Proteins Involved in CoNdensates In Cells

Web frontend (VueJs) and CMS (Strapi)

collections of hackyhour examples and documentation

Bifunctional Monosaccharides Preferentially Localize to Nuclear Subcompartments

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Improving contrast in confocal data by degrading image with model of light scattering

openfpm_pdata