Explore projects

Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Sequencing analysis pipeline for our paper "Human liver cholangiocyte organoids capture the heterogeneity of in vivo liver ductal epithelium"

Implementation of 2D unet. Use as base for user projects.

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

PDE inference from limited spatio-temporal data

Theory analysis and code for studying Drosophila wing disc eversion

This repository contains source codes and notebook demos for trainin STENCIL-NET.

This repository is all about simulating flow driven pruning in biological flow networks.

class definitions and methods for kirchhoff graphs

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation