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krishna / Laminin_network
Creative Commons Zero v1.0 UniversalHexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.
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walker / NNet_simple
BSD 3-Clause "New" or "Revised" LicenseUpdated -
Mateus_Group / Guanine_crystal_analysis_APOC
BSD 3-Clause "New" or "Revised" LicenseRepository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"
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Scientific Computing / bioimage_team / unet2d_base
BSD 3-Clause "New" or "Revised" LicenseImplementation of 2D unet. Use as base for user projects.
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Scientific Computing / bioimage_team / stardist_nnet_explore
BSD 3-Clause "New" or "Revised" LicenseUpdated -
This repository contains source codes and notebook demos for trainin STENCIL-NET.
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Huch lab / prior_et_al_2019
MIT LicenseSupplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"
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walker / cellpose_explore
BSD 3-Clause "New" or "Revised" LicenseExploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation
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krishna / WDeversion_theory
MIT LicenseTheory analysis and code for studying Drosophila wing disc eversion
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Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021
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kramer / cycle-coalescence-algorithm
MIT LicenseThis is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.
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rhaase / ABIA_Prague_2019
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells
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