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tothpetroczylab / SHARK
BSD 3-Clause "New" or "Revised" LicenseSimilarity/Homology Assessment by Relating K-mers
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bioinfo / ngs_tools
BSD 3-Clause "New" or "Revised" LicenseA collection of tools to process and manipulate high-throughput sequencing data
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Scientific Computing / bioimage_team / CourseMaterialImageAnalysis
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
Sbalzarini Lab / Software / Math / FaspHeuristic
MIT LicenseLibrary implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)
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tothpetroczylab / Picnic
BSD 3-Clause "New" or "Revised" LicensePICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.
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dibrov / chromosome_size
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Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"
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mirandaa / LipidXplorer2
BSD 3-Clause "New" or "Revised" LicenseCompletly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files
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Backend APIs (Flask) exposing data from database in RESTful format
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Mateus_Group / Guanine_crystal_analysis_APOC
BSD 3-Clause "New" or "Revised" LicenseRepository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"
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kramer / cycle-coalescence-algorithm
MIT LicenseThis is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.
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Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021
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Analysis of ARE in liver tissue. with Julien Delpierre
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Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).
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Simulation of virus transmission between cells
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