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class definitions and methods for kirchhoff graphs

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

This repository is all about simulating flow driven pruning in biological flow networks.

Theory analysis and code for studying Drosophila wing disc eversion

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

This software package implements the identification of robust topological defects.

Implementation of 2D unet. Use as base for user projects.

Napari-stress based image analysis pipeline for measuring physical stress in 68 microscopy recordings of oil droplets embedded in liver organoids.

private repo with testing jupyter notebooks