Explore projects

mirror of https://github.com/fbnrst/sequencing-docker-stacks to comply with MPI-CBG RDM

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.

Napari-stress based image analysis pipeline for measuring physical stress in 68 microscopy recordings of oil droplets embedded in liver organoids.

Similarity/Homology Assessment by Relating K-mers

Jenkins pipelines

Python package of the deTEL translation error detection pipeline from mass-spectrometry data

Sequencing analysis pipeline for our paper "Human assembloids recapitulate periportal liver tissue in vitro"

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

multiparameter persistence

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

New analyses for the "Navigating Uncertainty in Encoded Decision-Space" project. Analysis for both "Fruit Task" and "Hexagons Task."