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Sbalzarini Lab / Software / Parallel Computing / OpenFPM / openfpm
BSD 3-Clause "New" or "Revised" LicenseUpdated -
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Huch lab / prior_et_al_2019
MIT LicenseSupplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"
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Veenvliet Lab / Integrated_Molecular-Phenotypic_Profiling_of_Stembryos
BSD 3-Clause "New" or "Revised" LicenseThis is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.
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Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells
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tothpetroczylab / Picnic
BSD 3-Clause "New" or "Revised" LicensePICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.
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Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.
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krishna / WDeversion_theory
MIT LicenseTheory analysis and code for studying Drosophila wing disc eversion
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Scientific Computing / bioimage_team / stardist_nnet_explore
BSD 3-Clause "New" or "Revised" LicenseUpdated -
Scientific Computing / bioimage_team / unet2d_base
BSD 3-Clause "New" or "Revised" LicenseImplementation of 2D unet. Use as base for user projects.
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mirandaa / LipidXplorer2
BSD 3-Clause "New" or "Revised" LicenseCompletly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files
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Improving contrast in confocal data by degrading image with model of light scattering
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This software package implements the identification of robust topological defects.
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