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Scientific Computing / Kalebic_et_al_progenitors_processes_analysis
BSD 3-Clause "New" or "Revised" LicenseComplementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".
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Scientific Computing / bioimage_team / deconvolution_documentation
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
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Scientific Computing / bioimage_team / stardist_nnet_explore
BSD 3-Clause "New" or "Revised" LicenseUpdated -
Scientific Computing / Schuhmacher et al 2020. Live cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities.
BSD 3-Clause "New" or "Revised" LicenseLive cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities
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Scientific Computing / Subiran Adrados et al 2020. Salamander Eci - an optical clearing protocol for the three-dimensional exploration of regeneration
BSD 3-Clause "New" or "Revised" LicenseComplementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".
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Scientific Computing / bioimage_team / unet2d_base
BSD 3-Clause "New" or "Revised" LicenseImplementation of 2D unet. Use as base for user projects.
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Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"
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Scientific Computing / DAG_signaling_kinetics
BSD 3-Clause "New" or "Revised" LicenseQuantitative analysis of diacylglycerol signaling kinetics in single cells
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Scientific Computing / Belicova_et_al_BC_morphogenesis
BSD 3-Clause "New" or "Revised" Licensescripts related to the publication
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Scientific Computing / bioimage_team / IACourse_2020-12
Creative Commons Attribution Non Commercial 4.0 International3day Image analysis course given externally in 2020-12.
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Scientific Computing / bioimage_team / IJMacro_Course_2021-02
Creative Commons Attribution Non Commercial 4.0 InternationalMaterial for an IJ macro course.
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Scientific Computing / bioimage_team / Intro_ImageAnalysis_2021-05
Creative Commons Attribution Non Commercial 4.0 InternationalImage analysis course (20h): Concepts and hands-on with Fiji and Ilastik.
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Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"
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Scientific Computing / bioimage_team / Intro_ImageAnalysis_2021-07
Creative Commons Attribution Non Commercial 4.0 InternationalImage analysis course (4.5h): Concepts and hands-on with Fiji.
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Scientific Computing / Soans_et_al_opticalcup_surface
BSD 3-Clause "New" or "Revised" LicenseScript for publication - Matrix topology guides collective cell migration in vivo
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publications / nadler / 2022 Barahtjan and Iglesias Artola et al. Monosaccharide imaging
MIT LicenseBifunctional Monosaccharides Preferentially Localize to Nuclear Subcompartments
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