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This repository contains source codes and notebook demos for trainin STENCIL-NET.

Library for producing and processing on the Adaptive Particle Representation (APR)

Python wrappers for LibAPR

Scenery - Virtual Reality and Augmented Reality framework

Small scripts and bits for data processing interoperability with the cluster

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Interaction Analysis Toolbox for MATLAB

Region Competition algorithm implemented as an ITK filter (C++).

A MATLAB implementation of the split-Bregman algorithm for image segmentation

MATLAB Toolbox for cell-outline segmentation in phase-contrast images

MATLAB code for deconvolving snakes

MATLAB implementation of image naturalization

Implementation of the fast curvature filters for images.

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

Particle Tracking C/Java Source Code

Matlab toolbox and a tutorial on trajectory segmentation

MATLAB toolbox for particle tracking

pCMALib: a parallel FORTRAN 90 library for CMA-ES

MSS trajectory analysis

Brownian dynamics simulation of cross-linked filament bundles