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Sbalzarini Lab / Software / Parallel Computing / OpenFPM / openfpm
BSD 3Clause "New" or "Revised" LicenseUpdated 

Imagebased pipeline for solving inhomogeneous reactiondiffusion PDEs in realworld porous geometries. Levelset method (multiCPU) for reconstruction. Sparse grids (multiGPU) for diffusion simulation. Parallel data structures from OpenFPM.
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Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.
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Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)
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Sbalzarini Lab / Software / Math / minter
MIT LicenseUpdated 
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Region Competition algorithm implemented as an ITK filter (C++).
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Implementation of the fast curvature filters for images.
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MSS trajectory analysis
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Brownian dynamics simulation of crosslinked filament bundles
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Exact stochastic simulation of intracellular transport
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pSSAlib: Stochastic chemical network and reactiondiffusion simulation
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PPM client for diffusion on curved surfaces
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Sbalzarini Lab / Software / Parallel Computing / PPMRC
GNU General Public License v3.0 onlyPPM_RC: DistributedMemory Parallel Image Segmentation
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