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This repository is all about simulating flow driven pruning in biological flow networks.
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MotionTracking project to Analyze Hepatocyte Cages.
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publications / nadler / 2022 Barahtjan and Iglesias Artola et al. Monosaccharide imaging
MIT LicenseBifunctional Monosaccharides Preferentially Localize to Nuclear Subcompartments
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PDE inference from limited spatio-temporal data
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Scientific Computing / Soans_et_al_opticalcup_surface
BSD 3-Clause "New" or "Revised" LicenseScript for publication - Matrix topology guides collective cell migration in vivo
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krishna / Laminin_network
Creative Commons Zero v1.0 UniversalHexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.
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Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021
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kramer / cycle-coalescence-algorithm
MIT LicenseThis is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.
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mirandaa / LipidXplorer
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Sbalzarini Lab / Software / Parallel Computing / PPM / ppm
GNU General Public License v3.0 onlyUpdated -
Scientific Computing / Belicova_et_al_BC_morphogenesis
BSD 3-Clause "New" or "Revised" Licensescripts related to the publication
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Backend APIs (Flask) exposing data from database in RESTful format
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Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"
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Scientific Computing / DAG_signaling_kinetics
BSD 3-Clause "New" or "Revised" LicenseQuantitative analysis of diacylglycerol signaling kinetics in single cells
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Scientific Computing / bioimage_team / unet2d_base
BSD 3-Clause "New" or "Revised" LicenseImplementation of 2D unet. Use as base for user projects.
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Scientific Computing / Subiran Adrados et al 2020. Salamander Eci - an optical clearing protocol for the three-dimensional exploration of regeneration
BSD 3-Clause "New" or "Revised" LicenseComplementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".
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