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bioinfo / ngs_tools
BSD 3-Clause "New" or "Revised" LicenseA collection of tools to process and manipulate high-throughput sequencing data
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BioImage Informatics / SkeletonAnalysis
BSD 3-Clause "New" or "Revised" LicenseUpdated -
labShevchenko / PeakStrainer
MIT LicenseUpdated -
Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"
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Complementary information concerning the article "Evolution and cell-type specificity of human-specific genes preferentially expressed in progenitors of fetal neocortex"
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hidra fork, intended to exist until desy's hidra goes full open source on github or similar
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this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells
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Scientific Computing / Viktorinova_et_al_Actomyosin_dynamics
Creative Commons Attribution 4.0 InternationalAnalysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak
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bioinfo / datautils
BSD 2-Clause "Simplified" LicenseR utilities for data analysis and bioinformatics
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Scientific Computing / bioimage_team / CourseMaterialImageAnalysis
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
Scientific Computing / Kalebic_et_al_progenitors_processes_analysis
BSD 3-Clause "New" or "Revised" LicenseComplementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".
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Scientific Computing / bioimage_team / deconvolution_documentation
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
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Scientific Computing / bioimage_team / stardist_nnet_explore
BSD 3-Clause "New" or "Revised" LicenseUpdated -
Scientific Computing / Schuhmacher et al 2020. Live cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities.
BSD 3-Clause "New" or "Revised" LicenseLive cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities
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Scientific Computing / Subiran Adrados et al 2020. Salamander Eci - an optical clearing protocol for the three-dimensional exploration of regeneration
BSD 3-Clause "New" or "Revised" LicenseComplementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".
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Scientific Computing / bioimage_team / unet2d_base
BSD 3-Clause "New" or "Revised" LicenseImplementation of 2D unet. Use as base for user projects.
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