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MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group. More information about it can be found on official webpage of MOSAIC group.
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Material for an IJ macro course.
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Implementation of 2D unet. Use as base for user projects.
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R utilities for data analysis and bioinformatics
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3day Image analysis course given externally in 2020-12.
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scripts related to the publication
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Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation
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An R package containing the SCF helper functions
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Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files
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Scripts written for the paper: "Asymmetric neurogenic commitment of retinal progenitors involves Notch through the endocytic pathway"
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Quantitative analysis of diacylglycerol signaling kinetics in single cells
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Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"