GitLab

Script for publication - Matrix topology guides collective cell migration in vivo

Jenkins pipelines

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

This repository contains source codes and notebook demos for trainin STENCIL-NET.

Library for producing and processing on the Adaptive Particle Representation (APR)

Python wrappers for LibAPR

Scenery - Virtual Reality and Augmented Reality framework

Small scripts and bits for data processing interoperability with the cluster

This repository is all about simulating flow driven pruning in biological flow networks.

hyrdrodynamics methods for kirchhoff graphs

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Interaction Analysis Toolbox for MATLAB

Region Competition algorithm implemented as an ITK filter (C++).

A MATLAB implementation of the split-Bregman algorithm for image segmentation

MATLAB Toolbox for cell-outline segmentation in phase-contrast images