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Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

This repository contains source codes and notebook demos for trainin STENCIL-NET.

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

PDE inference from limited spatio-temporal data

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

real-time in-situ visualization of distributed numerical simulations

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Scenery - Virtual Reality and Augmented Reality framework

Interaction Analysis Toolbox for MATLAB

Region Competition algorithm implemented as an ITK filter (C++).

A MATLAB implementation of the split-Bregman algorithm for image segmentation

MATLAB Toolbox for cell-outline segmentation in phase-contrast images

MATLAB code for deconvolving snakes