Commits · 3f88210127ce5b7732c07316ddee5484ec2306bd · bioinfo / ngs_tools

Jul 30, 2015
- added cuffdiff report without enrichment analysis · 3f882101
  Holger Brandl authored 9 years ago
  
  3f882101
Jul 29, 2015
- continued diffex test · 3c6c0c23
  Holger Brandl authored 9 years ago
  
  3c6c0c23
Jul 23, 2015
- cont deseq workflow · 09caee9d
  Holger Brandl authored 9 years ago
  
  09caee9d
- cont. deseq workflow · 846c8634
  Holger Brandl authored 9 years ago
  
  846c8634
Jul 21, 2015
- star debugging · 2f5f16d4
  Holger Brandl authored 9 years ago
  
  2f5f16d4
Jul 17, 2015
- use star alignments for cuffdiff · 5f24a758
  Holger Brandl authored 9 years ago
  
  5f24a758
- cosmetics · 61087a14
  Holger Brandl authored 9 years ago
  
  61087a14
Jul 14, 2015
- use short queue for star · 54013ebe
  Holger Brandl authored 9 years ago
  
  54013ebe
Jul 13, 2015
- fixed missing bracket · f155bd8e
  Holger Brandl authored 9 years ago
  
  f155bd8e
Jun 30, 2015
- cosmetics · d6ef9576
  Holger Brandl authored 9 years ago
  
  d6ef9576
Jun 24, 2015
- softclipping_reports · 8a0c61ff
  Melanie Schneider authored 9 years ago
  
  8a0c61ff
Jun 19, 2015
- cosmetics · c3df68cb
  Holger Brandl authored 9 years ago
  
  c3df68cb
Jun 16, 2015
- started feature counts deseq workflow · 9b5dbd53
  Holger Brandl authored 9 years ago
  
  9b5dbd53
- finished basic star qc · d94b70ca
  Holger Brandl authored 9 years ago
  
  d94b70ca
- added feature counts to star workflow · 6cd1c5e3
  Holger Brandl authored 9 years ago
  
  6cd1c5e3
- improved star wrapper · ffa075d2
  Holger Brandl authored 9 years ago
  
  ffa075d2
- continued star wrapper · b2618dd9
  Holger Brandl authored 9 years ago
  
  b2618dd9
Jun 15, 2015
- continued star wrapper · 80340742
  Holger Brandl authored 9 years ago
  
  80340742
- started star aligner wrapper · 3c89c2c6
  Holger Brandl authored 9 years ago
  
  3c89c2c6
Jun 11, 2015
- cosmetics · faf37ff3
  Holger Brandl authored 9 years ago
  
  faf37ff3
- fixed for reads longer than 100n · 0bb3cda1
  Holger Brandl authored 9 years ago
  
  0bb3cda1
Jun 03, 2015
- inced commons dependencies · 459d1a28
  Holger Brandl authored 9 years ago
  
  459d1a28
May 21, 2015
- reenabled job submission for cuffdiff · cd68fe72
  Holger Brandl authored 9 years ago
  
  cd68fe72
- improved excel example · dc6b99fe
  Holger Brandl authored 9 years ago
  
  dc6b99fe
- adjusted to use new .logs directory · 37ca0314
  Holger Brandl authored 9 years ago
  
  37ca0314
- renamed DGE_HOME to NGS_TOOLS · 129c852e
  Holger Brandl authored 9 years ago
  
  129c852e
- improved dge templates · 6dc2c135
  Holger Brandl authored 9 years ago
  
  6dc2c135
May 20, 2015
- improved dge template · c3958cf3
  Holger Brandl authored 9 years ago
  
  c3958cf3
- added more sheet parser examples · 8e2316e6
  Holger Brandl authored 9 years ago
  
  :
  8e2316e6
- improved master template · 72a97eec
  Holger Brandl authored 9 years ago
  
  72a97eec
Apr 30, 2015
- replaced dropbox links to core_* with versioned github links · 6f0748b9
  Holger Brandl authored 9 years ago
  
  6f0748b9
Apr 29, 2015
- changed to use default igv port · 3ddf07d2
  Holger Brandl authored 9 years ago
  
  3ddf07d2
Apr 23, 2015
- tooltips for pathways · 0669bc52
  Holger Brandl authored 9 years ago
  
  0669bc52
- create local copy of spinnable script for better decoupling of analysis · 08c29098
  Holger Brandl authored 9 years ago
  
  08c29098
Apr 16, 2015
- cometics · 16a9b342
  Holger Brandl authored 9 years ago
  
  16a9b342
Apr 09, 2015
- fixed: duplicated pathways · a1e8e701
  Holger Brandl authored 9 years ago
  
  a1e8e701
Apr 08, 2015
- better volcano plots · 8da587a3
  Holger Brandl authored 9 years ago
  
  8da587a3
- cosmetics · ae7d391d
  Holger Brandl authored 9 years ago
  
  ae7d391d
- new report and timepoint clusterings · 6bc2fb96
  Holger Brandl authored 9 years ago
  
  6bc2fb96
- cont better dge report · 2bc38c7e
  Holger Brandl authored 9 years ago
  
  2bc38c7e