Explore projects

This repository contains source codes and notebook demos for trainin STENCIL-NET.

hyrdrodynamics methods for kirchhoff graphs

Sequencing analysis pipeline for our paper "Human assembloids recapitulate periportal liver tissue in vitro"

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

multiparameter persistence

Improving contrast in confocal data by degrading image with model of light scattering

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

Supplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

This is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.

PDE inference from limited spatio-temporal data