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Implementation of 2D unet. Use as base for user projects.

Script for publication - Matrix topology guides collective cell migration in vivo

Scripts written for the paper: "Asymmetric neurogenic commitment of retinal progenitors involves Notch through the endocytic pathway"

PDE inference from limited spatio-temporal data

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

Docker container for single-cell-RNAseq analysis

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

MotionTracking project to Analyze Hepatocyte Cages.

This software package implements the identification of robust topological defects.

New analyses for the "Navigating Uncertainty in Encoded Decision-Space" project. Analysis for both "Fruit Task" and "Hexagons Task."

This repository contains the image analysis pipelines for bile canaliculi analysis and mesenchyme counting associated with the paper "Mouse liver assembloids model periportal architecture and biliary fibrosis"

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".

Filter .fasta file by accession Number

Python package of the deTEL translation error detection pipeline from mass-spectrometry data

scripts related to the publication