Explore projects

Similarity/Homology Assessment by Relating K-mers

Backend APIs (Flask) exposing data from database in RESTful format

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

collections of hackyhour examples and documentation

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

resolution slope calculator for Lipid xplorer

useful functionality for image-, data-analysis and classification of stembryos

This repository contains source codes and notebook demos for trainin STENCIL-NET.

Theory analysis and code for studying Drosophila wing disc eversion

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Live cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"