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Backend APIs (Flask) exposing data from database in RESTful format
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Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"
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tothpetroczylab / Picnic
BSD 3-Clause "New" or "Revised" LicensePICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.
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mirandaa / LipidXplorer2
BSD 3-Clause "New" or "Revised" LicenseCompletly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files
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hidra fork, intended to exist until desy's hidra goes full open source on github or similar
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rhaase / lecture_bioimage_analysis_with_fiji
BSD 3-Clause "New" or "Revised" LicenseUpdated -
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labShevchenko / PeakStrainer
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Improving contrast in confocal data by degrading image with model of light scattering
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publications / nadler / 2022 Barahtjan and Iglesias Artola et al. Monosaccharide imaging
MIT LicenseBifunctional Monosaccharides Preferentially Localize to Nuclear Subcompartments
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this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells
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A web service for calculating the Levenshtein distance between two sequences
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This software package implements the identification of robust topological defects.
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This repository is all about simulating flow driven pruning in biological flow networks.
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Scientific Computing / Kalebic_et_al_progenitors_processes_analysis
BSD 3-Clause "New" or "Revised" LicenseComplementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".
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kramer / cycle-coalescence-algorithm
MIT LicenseThis is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.
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