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Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Documentations for CD-CODE project

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Backend APIs (Flask) exposing data from database in RESTful format

A collection of tools to process and manipulate high-throughput sequencing data

openfpm_pdata

Web frontend (VueJs) and CMS (Strapi)

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Analysis of ARE in liver tissue. with Julien Delpierre

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Segmentation of the basal cell-matrix contact sites on laminin structure

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

hidra fork, intended to exist until desy's hidra goes full open source on github or similar