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Henricks script as Python

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

hyrdrodynamics methods for kirchhoff graphs

class definitions and methods for kirchhoff graphs

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

This is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.

This repository contains the image analysis pipelines for bile canaliculi analysis and mesenchyme counting associated with the paper "Mouse liver assembloids model periportal architecture and biliary fibrosis"

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

This repository is all about simulating flow driven pruning in biological flow networks.

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Improving contrast in confocal data by degrading image with model of light scattering