Explore projects

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

Theory analysis and code for studying Drosophila wing disc eversion

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Similarity/Homology Assessment by Relating K-mers

This software package implements the identification of robust topological defects.

Improving contrast in confocal data by degrading image with model of light scattering

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

hyrdrodynamics methods for kirchhoff graphs

This repository is all about simulating flow driven pruning in biological flow networks.

class definitions and methods for kirchhoff graphs

PDE inference from limited spatio-temporal data

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.