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krishna / WDeversion_theory
MIT LicenseTheory analysis and code for studying Drosophila wing disc eversion
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Scientific Computing / bioimage_team / unet2d_base
BSD 3-Clause "New" or "Revised" LicenseImplementation of 2D unet. Use as base for user projects.
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This repository contains source codes and notebook demos for trainin STENCIL-NET.
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Scientific Computing / bioimage_team / stardist_nnet_explore
BSD 3-Clause "New" or "Revised" LicenseUpdated -
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This software package implements the identification of robust topological defects.
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Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.
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tothpetroczylab / Picnic
BSD 3-Clause "New" or "Revised" LicensePICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.
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PDE inference from limited spatio-temporal data
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Sbalzarini Lab / Software / Parallel Computing / OpenFPM / openfpm
BSD 3-Clause "New" or "Revised" LicenseUpdated -
walker / NNet_simple
BSD 3-Clause "New" or "Revised" LicenseUpdated -
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mirandaa / LipidXplorer2
BSD 3-Clause "New" or "Revised" LicenseCompletly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files
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rhaase / lecture_applied_bioimage_analysis
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
krishna / Laminin_network
Creative Commons Zero v1.0 UniversalHexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.
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