Explore projects

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

Python package of the deTEL translation error detection pipeline from mass-spectrometry data

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

New analyses for the "Navigating Uncertainty in Encoded Decision-Space" project. Analysis for both "Fruit Task" and "Hexagons Task."

Jenkins pipelines

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

Scenery - Virtual Reality and Augmented Reality framework

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

PPM_RC: Distributed-Memory Parallel Image Segmentation

polishing pipelines

gap closing pipeline based on gcpp

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"