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Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Backend APIs (Flask) exposing data from database in RESTful format

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

Implementation of 2D unet. Use as base for user projects.

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".

PDE inference from limited spatio-temporal data

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Complementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Theory analysis and code for studying Drosophila wing disc eversion

useful functionality for image-, data-analysis and classification of stembryos

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

A Python library for reducing differential equations and dynamical systems.

This repository contains source codes and notebook demos for trainin STENCIL-NET.

Live cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities