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Similarity/Homology Assessment by Relating K-mers

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Backend APIs (Flask) exposing data from database in RESTful format

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Theory analysis and code for studying Drosophila wing disc eversion

useful functionality for image-, data-analysis and classification of stembryos

This repository contains source codes and notebook demos for trainin STENCIL-NET.

Live cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities

collections of hackyhour examples and documentation

resolution slope calculator for Lipid xplorer

Library for producing and processing on the Adaptive Particle Representation (APR)