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Slicing lc ms data into time ... slices, to run lipidxplorer on the slices
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Scientific Computing / bioimage_team / unet2d_base
BSD 3-Clause "New" or "Revised" LicenseImplementation of 2D unet. Use as base for user projects.
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Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"
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Scientific Computing / DAG_signaling_kinetics
BSD 3-Clause "New" or "Revised" LicenseQuantitative analysis of diacylglycerol signaling kinetics in single cells
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Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"
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Backend APIs (Flask) exposing data from database in RESTful format
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walker / cellpose_explore
BSD 3-Clause "New" or "Revised" LicenseExploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation
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Scientific Computing / Belicova_et_al_BC_morphogenesis
BSD 3-Clause "New" or "Revised" Licensescripts related to the publication
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Sbalzarini Lab / Software / Parallel Computing / PPM / ppm
GNU General Public License v3.0 onlyUpdated -
Sbalzarini Lab / Software / Parallel Computing / PPM / ppmnumerics
GNU General Public License v3.0 onlyUpdated -
Scientific Computing / bioimage_team / IACourse_2020-12
Creative Commons Attribution Non Commercial 4.0 International3day Image analysis course given externally in 2020-12.
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Scientific Computing / bioimage_team / IJMacro_Course_2021-02
Creative Commons Attribution Non Commercial 4.0 InternationalMaterial for an IJ macro course.
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mirandaa / LipidXplorer
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